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2012
Bleda M, Tarraga J, de Maria A, Salavert F, Garcia-Alonso L, Celma M, Martin A, Dopazo J, Medina I.  2012.  CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.. Nucleic Acids Res. 40:W609-14.
Bleda M, Tarraga J, de Maria A, Salavert F, Garcia-Alonso L, Celma M, Martin A, Dopazo J, Medina I.  2012.  CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.. Nucleic Acids Res. 40:W609-14.
Torres JSalavert, Espert IBlanquer, Dominguez ATomas, Hernendez V, Medina I, Terraga J, Dopazo J.  2012.  Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform. IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB). 9
Medina I, de Maria A, Bleda M, Salavert F, Alonso R, Gonzalez CY, Dopazo J.  2012.  VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing.. Nucleic Acids Res. 40:W54-8.
2013
Medina I, Salavert F, Sanchez R, de Maria A, Alonso R, Escobar P, Bleda M, Dopazo J.  2013.  Genome Maps, a new generation genome browser.. Nucleic Acids Res. 41:W41-6.
González CY, Bleda M, Salavert F, Sanchez R, Dopazo J, Medina I.  2013.  Multicore and Cloud-Based Solutions for Genomic Variant Analysis. Euro-Par 2012: Parallel Processing Workshops. 7640
2014
Tarraga J, Arnau V, Martínez H, Moreno R, Cazorla D, Salavert-Torres J, Blanquer-Espert I, Dopazo J, Medina I.  2014.  Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.. Bioinformatics. 30:3396-8.
Tarraga J, Arnau V, Martínez H, Moreno R, Cazorla D, Salavert-Torres J, Blanquer-Espert I, Dopazo J, Medina I.  2014.  Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.. Bioinformatics. 30:3396-8.
Tarraga J, Arnau V, Martínez H, Moreno R, Cazorla D, Salavert-Torres J, Blanquer-Espert I, Dopazo J, Medina I.  2014.  Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.. Bioinformatics. 30:3396-8.
2015
Martínez H, Tarraga J, Medina I, Barrachina S, Castillo M, Dopazo J, Quintana-Ortí ES.  2015.  Concurrent and Accurate Short Read Mapping on Multicore Processors.. IEEE/ACM Trans Comput Biol Bioinform. 12:995-1007.
Martínez H, Tarraga J, Medina I, Barrachina S, Castillo M, Dopazo J, Quintana-Ortí ES.  2015.  Concurrent and Accurate Short Read Mapping on Multicore Processors.. IEEE/ACM Trans Comput Biol Bioinform. 12:995-1007.
2016
Medina I, Tárraga J, Martínez H, Barrachina S, Castillo MI, Paschall J, Salavert-Torres J, Blanquer-Espert I, Hernández-García V, Quintana-Ortí ES et al..  2016.  Highly sensitive and ultrafast read mapping for RNA-seq analysis.. DNA Res.
Medina I, Tárraga J, Martínez H, Barrachina S, Castillo MI, Paschall J, Salavert-Torres J, Blanquer-Espert I, Hernández-García V, Quintana-Ortí ES et al..  2016.  Highly sensitive and ultrafast read mapping for RNA-seq analysis.. DNA Res.
Tarraga J, Gallego A, Arnau V, Medina I, Dopazo J.  2016.  HPG pore: an efficient and scalable framework for nanopore sequencing data.. BMC Bioinformatics. 17:107.