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Medina I, de Maria A, Bleda M, Salavert F, Alonso R, Gonzalez CY, Dopazo J. 2012. VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing.. Nucleic Acids Res. 40:W54-8.

Medina I, Salavert F, Sanchez R, de Maria A, Alonso R, Escobar P, Bleda M, Dopazo J. 2013. Genome Maps, a new generation genome browser.. Nucleic Acids Res. 41:W41-6.

Medina I, Tárraga J, Martínez H, Barrachina S, Castillo MI, Paschall J, Salavert-Torres J, Blanquer-Espert I, Hernández-García V, Quintana-Ortí ES et al.. 2016. Highly sensitive and ultrafast read mapping for RNA-seq analysis.. DNA Res.

Martínez H, Tarraga J, Medina I, Barrachina S, Castillo M, Dopazo J, Quintana-Ortí ES. 2015. Concurrent and Accurate Short Read Mapping on Multicore Processors.. IEEE/ACM Trans Comput Biol Bioinform. 12:995-1007.